Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs75278322 chr5:54574248 T/C 1.24E-9 177 15.57 15.7 1.17 KM Plot
PAAD rs75284290 chr1:227450092 C/T 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs75287009 chr2:70498020 C/T 0 178 15.37 17.4 1.03 KM Plot
PAAD rs7530155 chr1:227410186 C/A 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs75316580 chr2:239199374 G/A 1.29E-7 175 15.33 19.87 3.17 KM Plot
PAAD rs75322809 chr1:227573821 T/C 6.96E-5 176 15.4 16.45 3.9 KM Plot
PAAD rs75330309 chr1:227509115 T/C 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs7534185 chr1:89894416 C/G 4.45E-6 178 4.45 13.5 15.62 KM Plot
PAAD rs75355781 chr2:70494634 T/G 0 178 15.37 17.4 1.03 KM Plot
PAAD rs7535648 chr1:227306556 C/T 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs75368595 chr11:68491769 A/G 8.79E-10 178 15.57 14.2 2.2 KM Plot
PAAD rs75396930 chr7:20663898 G/A 1.81E-6 178 15.53 15.57 3.67 KM Plot
PAAD rs7545722 chr1:89894471 C/T 7.64E-6 178 15.57 14.63 4.47 KM Plot
PAAD rs75464175 chr7:20654168 A/G 1.81E-6 178 15.53 15.57 3.67 KM Plot
PAAD rs7547092 chr1:227413438 T/C 3.22E-5 178 15.55 15.43 3.9 KM Plot